Alexey Savelyev: search on Z-Library

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1

Moving analytical ultracentrifugation software to a good manufacturing practices (GMP) environment

Savelyev, Alexey, Gorbet, Gary E., Henrickson, Amy, Demeler, Borries, Schneidman-Duhovny, Dina

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 1.26 MB

2020

2

Antibacterial polyurethane materials with silver and copper nanoparticles

Savelyev, Yurii, Gonchar, Alexey, Movchan, Boris, Gornostay, Alexey, Vozianov, Sergey, Rudenko, Adel, Rozhnova, Rita, Travinskaya, Tamara

Journal:

Materials Today: Proceedings

Year:

2017

Language:

english

File:

PDF, 433 KB

english, 2017

3

Accurate Assessment of Biomolecular Partial Specific Volumes from Polarizable MD Simulations and Analytical Ultracentrifugation Experiments

Savelyev, Alexey, Demeler, Borries

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 43 KB

2020

4

Towards a Polarizable Force Field for RNA based on the Classical Drude Oscillator

Lemkul, Justin A., Savelyev, Alexey, MacKerell, Alexander D.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

5

[ACM Press the Practice and Experience in Advanced Research Computing 2017 - New Orleans, LA, USA (2017.07.09-2017.07.13)] Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact - PEARC17 - GenApp Integrated with OpenStack Supports Elastic Computing on Jetstream

Brookes, Emre, Savelyev, Alexey

Year:

2017

File:

PDF, 1.68 MB

2017

6

Balancing the Interactions of Ions, Water, and DNA in the Drude Polarizable Force Field

Savelyev, Alexey, MacKerell, Alexander D.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.22 MB

english, 2014

7

Polyionic Charge Density Plays a Key Role in Differential Recognition of Mobile Ions by Biopolymers

Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 886 KB

english, 2008

8

Supersymmetry theory of microphase separation in homopolymer-oligomer mixtures

Olemskoi, Alexander, Krakovsky, Ivan, Savelyev, Alexey

Journal:

Physical Review E

Year:

2004

Language:

english

File:

PDF, 152 KB

english, 2004

9

SPIE Proceedings [SPIE SPIE Photonics Europe - Brussels, Belgium (Monday 14 April 2014)] Semiconductor Lasers and Laser Dynamics VI - The analytical approach to the multi-state lasing phenomenon in undoped and p-doped InAs/InGaAs semiconductor quantum dot lasers

Panajotov, Krassimir, Sciamanna, Marc, Valle, Angel, Michalzik, Rainer, Korenev, Vladimir V., Savelyev, Artem V., Zhukov, Alexey E., Omelchenko, Alexander V., Maximov, Mikhail V.

Year:

2014

Language:

english

File:

PDF, 353 KB

english, 2014

10

Induced Polarization Influences the Fundamental Forces in DNA Base Flipping

Lemkul, Justin A., Savelyev, Alexey, MacKerell, Alexander D.

Journal:

The Journal of Physical Chemistry Letters

Year:

2014

Language:

english

File:

PDF, 1.67 MB

english, 2014

11

SPIE Proceedings [SPIE SPIE Optics + Optoelectronics - Prague, Czech Republic (Monday 13 April 2015)] Nonlinear Optics and Applications IX - Waveguide and active region structure optimization for low-divergence InAs/InGaAs quantum dot comb lasers

Bertolotti, Mario, Haus, Joseph W., Zheltikov, Alexei M., Korenev, Vladimir V., Savelyev, Artem V., Zhukov, Alexey E., Maximov, Mikhail V., Omelchenko, Alexander V.

Year:

2015

Language:

english

File:

PDF, 475 KB

english, 2015

12

Theoretical and NMR Conformational Studies of β-Proline Oligopeptides With Alternating Chirality of Pyrrolidine Units

Mantsyzov, Alexey B., Savelyev, Oleg Y., Ivantcova, Polina M., Bräse, Stefan, Kudryavtsev, Konstantin V., Polshakov, Vladimir I.

Journal:

Frontiers in Chemistry

Year:

2018

Language:

english

File:

PDF, 4.54 MB

english, 2018

13

[ACM Press the Practice and Experience in Advanced Research Computing 2017 - New Orleans, LA, USA (2017.07.09-2017.07.13)] Proceedings of the Practice and Experience in Advanced Research Computing 2017 on Sustainability, Success and Impact - PEARC17 - GenApp Integrated with OpenStack Supports Elastic Computing on Jetstream

Brookes, Emre, Savelyev, Alexey

Year:

2017

Language:

english

File:

PDF, 1.68 MB

english, 2017

14

Electrostatic, Steric, and Hydration Interactions Favor Na + Condensation around DNA Compared with K +

Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2006

Language:

english

File:

PDF, 615 KB

english, 2006

15

Competition among Li + , Na + , K + , and Rb + Monovalent Ions for DNA in Molecular Dynamics Simulations Using the Additive CHARMM36 and Drude Polarizable Force Fields

Savelyev, Alexey, MacKerell, Alexander D.

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 2.70 MB

english, 2015

16

Characterization of primary normal and malignant breast cancer cell and their response to chemotherapy and immunostimulatory agents

Nushtaeva, Anna A., Stepanov, Grigory A., Semenov, Dmitry V., Juravlev, Evgeny S., Balahonova, Evgenia A., Gerasimov, Alexey V., Sidorov, Sergey V., Savelyev, Eugeniy I., Kuligina, Elena V., Richter,

Journal:

Year:

2018

Language:

english

File:

PDF, 2.00 MB

english, 2018

17

Free energy calculations of counterion partitioning between DNA and chloride solutions

Alexey Savelyev, Garegin A. Papoian

Journal:

Mendeleev Communications

Year:

2007

Language:

english

File:

PDF, 1.90 MB

english, 2007

18

Molecular Renormalization Group Coarse-Graining of Electrolyte Solutions: Application to Aqueous NaCl and KCl

Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 1.67 MB

english, 2009

19

GenApp: Extensible tool for rapid generation of web and native GUI applications

Savelyev, Alexey, Brookes, Emre

Journal:

Future Generation Computer Systems

Year:

2017

Language:

english

File:

PDF, 11.67 MB

english, 2017

20

Counterion Atmosphere and Hydration Patterns near a Nucleosome Core Particle

Materese, Christopher K., Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 3.11 MB

english, 2009

21

CHARMM Drude Polarizable MD Simulations Reproduce Solution X-Ray Diffraction Patterns for B-DNA Sequences and Predict Differential Impact of the Li+, Na+, K+ and Rb+ Ions on DNA Conformational Properties

Savelyev, Alexey, Mackerell, Alexander

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

22

Joining tungsten with steel for DEMO: Simultaneous brazing by Cu-Ti amorphous foils and heat treatment

Bachurina, Diana, Suchkov, Alexey, Gurova, Julia, Savelyev, Maxim, Dzhumaev, Pavel, Kozlov, Ilya, Svetogorov, Roman, Leontâeva-Smirnova, Maria, Sevryukov, Oleg

Journal:

Fusion Engineering and Design

Year:

2021

File:

PDF, 9.10 MB

2021

23

Theory of microphase separation in homopolymer–oligomer mixtures

Alexander Olemskoi, Alexey Savelyev

Journal:

Physics Reports

Year:

2005

Language:

english

File:

PDF, 911 KB

english, 2005

24

All-atom polarizable force field for DNA based on the classical drude oscillator model

Savelyev, Alexey, MacKerell, Alexander D.

Journal:

Journal of Computational Chemistry

Year:

2014

Language:

english

File:

PDF, 2.11 MB

english, 2014

25

Development of a Polarizable Force Field for Macromolecules Based on the Classical Drude Oscillator

Lopes, Pedro E.M., Huang, Jing, Shim, Jihyun, Luo, Yun, Li, Hui, Savelyev, Alexey, Patel, Dhilon, He, Xibing, Roux, Benoît, MacKerell, Alexander D.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 40 KB

english, 2014

26

Molecular Renormalization Group Coarse-Graining of Polymer Chains: Application to Double-Stranded DNA

Savelyev, Alexey, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 292 KB

english, 2009

27

Differential Deformability of the DNA Minor Groove and Altered BI/BII Backbone Conformational Equilibrium by the Monovalent Ions Li + , Na + , K + , and Rb + via Water-Mediated Hydrogen Bonding

Savelyev, Alexey, MacKerell, Alexander D.

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 3.29 MB

english, 2015

28

Do monovalent mobile ions affect DNA's flexibility at high salt content?

Savelyev, Alexey

Journal:

Physical Chemistry Chemical Physics

Year:

2012

Language:

english

File:

PDF, 1.45 MB

english, 2012

29

Theory of homopolymer–oligomer microphase separation

Alexander Olemskoi, Ivan Krakovsky, Alexey Savelyev

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2004

Language:

english

File:

PDF, 234 KB

english, 2004

30

Is DNA’s Rigidity Dominated by Electrostatic or Nonelectrostatic Interactions?

Savelyev, Alexey, Materese, Christopher K., Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 1.63 MB

english, 2011

31

SPIE Proceedings [SPIE Photonics Asia - Beijing, China (Monday 5 November 2012)] Semiconductor Lasers and Applications V - Quantum dot lasers and relevant nanoheterostructures

Zhukov, Alexey E., Kryzhanovskaya, Natalia V., Savelyev, Artem V., Nadtochiy, Alexey M., Arakcheeva, Ekaterina M., Zubov, Fedor I., Korenev, Vladimir V., Maximov, Mikhail V., Shernyakov, Yuri M., Kula

Year:

2012

Language:

english

File:

PDF, 606 KB

english, 2012

32

Inter-DNA Electrostatics from Explicit Solvent Molecular Dynamics Simulations

Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 109 KB

english, 2007

33

Differential Impact of the Monovalent Ions Li + , Na + , K + , and Rb + on DNA Conformational Properties

Savelyev, Alexey, MacKerell, Alexander D.

Journal:

The Journal of Physical Chemistry Letters

Year:

2015

Language:

english

File:

PDF, 829 KB

english, 2015

34

Quantum dot laser optimization: selectively doped layers

Korenev, Vladimir V, Konoplev, Sergey S, Savelyev, Artem V, Shernyakov, Yurii M, Maximov, Mikhail V, Zhukov, Alexey E

Journal:

Journal of Physics Conference Series

Year:

2016

Language:

english

File:

PDF, 750 KB

english, 2016

35

High-temperature brazing of tungsten with steel by Cu-based ribbon brazing alloys for DEMO

Bachurina, Diana, Suchkov, Alexey, Filimonov, Alexey, Fedotov, Ivan, Savelyev, Maxim, Sevryukov, Oleg, Kalin, Boris

Journal:

Fusion Engineering and Design

Year:

2019

Language:

english

File:

PDF, 1.35 MB

english, 2019

36

[AIP PHYSICS OF SEMICONDUCTORS: 28th International Conference on the Physics of Semiconductors - ICPS 2006 - Vienna (Austria) (24-28 July 2006)] AIP Conference Proceedings - Bipolar charging in quantum dots array

Savelyev, Artem V., Karachinsky, Leonid Ya., Shkolnik, Alexey S., Pellegrini, Sara, Gordeev, Nikita Yu., Tartakovskii, Alexander I., Evtikhiev, Vadim P., Zegrya, Georgy G., Maximov, Mikhail V., Ustino

Year:

2007

Language:

english

File:

PDF, 413 KB

english, 2007

37

Recent successes in coarse-grained modeling of DNA

Davit A. Potoyan, Alexey Savelyev, Garegin A. Papoian

Journal:

Wiley Interdisciplinary Reviews: Computational Molecular Science

Year:

2012

Language:

english

File:

PDF, 709 KB

english, 2012

38

SPIE Proceedings [SPIE SPIE Optics + Optoelectronics - Prague, Czech Republic (Monday 15 April 2013)] Nonlinear Optics and Applications VII - Analytical model of ground-state lasing phenomenon in broadband semiconductor quantum dot lasers

Korenev, Vladimir V., Savelyev, Artem V., Zhukov, Alexey E., Omelchenko, Alexander V., Maximov, Mikhail V.

Year:

2013

Language:

english

File:

PDF, 452 KB

english, 2013

39

Nonequilibrium Water Transport in a Nonionic Microemulsion System

Minakova, Maria, Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 3.86 MB

english, 2011

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